LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-155-5p


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Gene
miRNA
Score
DIANA Links
chr22-38_28785274-29006793.1
hsa-miR-155-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623644
Biotype: lincRNA
Gene id: ENSG00000279978
Gene Name: chr22-38_28785274-29006793.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
149244-149269
0.032
7
8mer
199857-199874
0.013
1
7mer
123820-123834
0.010
9
8mer
202211-202232
0.010
Not Conserved
8mer
13618-13631
0.009
0
8mer
106423-106438
0.008
0
8mer
238501-238517
0.007
0
7mer
94066-94080
0.007
3
7mer
136985-137005
0.005
1
7mer
10879-10901
0.005
1
7mer
3193-3220
0.005
1
8mer
28222-28239
0.005
1
7mer
36256-36274
0.005
Not Conserved
7mer
23010-23031
0.005
1
7mer
118445-118467
0.005
1
7mer
163015-163029
0.004
0
7mer
57784-57809
0.004
4
7mer
130478-130494
0.004
1
8mer
95772-95795
0.004
1
7mer
251301-251323
0.004
0
7mer
192315-192327
0.003
1
6mer
114164-114187
0.003
8
6mer
254609-254617
0.003
9
7mer
57364-57387
0.003
0
6mer
150011-150036
0.003
9
7mer
48464-48490
0.003
0
7mer
229765-229782
0.003
0
6mer
186531-186550
0.003
5
6mer
23485-23505
0.003
4
6mer
254319-254333
0.003
4
7mer
79625-79643
0.003
0
6mer
70408-70428
0.002
1
6mer
194831-194841
0.002
2
6mer
58850-58873
0.002
6
6mer
70090-70108
0.002
3
6mer
177372-177398
0.002
3
6mer
4277-4304
0.002
0
7mer
245227-245238
0.002
0
6mer
35983-36010
0.002
1
6mer
178955-178972
0.002
0
7mer
89690-89711
0.002
1
6mer
151821-151839
0.002
1
6mer
73465-73485
0.002
1
6mer
31116-31132
0.002
3
6mer
166267-166284
0.002
4
6mer
180263-180288
0.002
3
6mer
88030-88040
0.002
1
6mer
47800-47821
0.002
6
6mer
91707-91719
0.002
0
6mer
33532-33547
0.002
4
6mer
98570-98586
0.002
3
6mer
248857-248873
0.002
0
6mer
123592-123607
0.002
5
6mer
59214-59233
0.002
2
6mer
79610-79620
0.002
1
6mer
89454-89479
0.002
1
6mer
92762-92789
0.002
1
6mer
200195-200209
0.002
1
6mer
9506-9532
0.002
4
6mer
1347-1365
0.002
1
6mer
146159-146186
0.002
2
6mer
131437-131462
0.001
1
6mer
44370-44391
0.001
2
6mer
86902-86926
0.001
0
6mer
57472-57492
0.001
5
6mer
225406-225425
0.001
0
6mer
210339-210359
0.001
2
6mer
11408-11419
0.001
Not Conserved
6mer
105188-105210
0.001
1
6mer
257448-257459
0.001
1
6mer
118669-118691
0.001
1
7mer
242733-242752
0.001
0
6mer
221029-221054
0.001
2
6mer
3269-3291
0.001
7
6mer
245163-245182
0.001
0
6mer
150865-150891
0.001
0
6mer
93331-93350
0.001
0
6mer
244702-244719
0.001
0
6mer
248994-249020
0.001
0
6mer
151847-151858
0.001
0
6mer
57543-57568
0.001
3
6mer
192356-192370
0.001
1
6mer
119068-119083
0.001
2
6mer
33631-33652
0.001
0
6mer
118482-118503
0.000
1
XLOC_009511
hsa-miR-155-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00020103
Biotype: transcript isomorph
Gene id: XLOC_009511
Gene Name: XLOC_009511
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-311
0.143
0
8mer
528-547
0.106
0
LOC100190986
hsa-miR-155-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_024456.1
Biotype: sense
Gene id: NR_024456.1 (gene)
Gene Name: LOC100190986
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
312-336
0.143
0
7mer
882-896
0.031
0
6mer
23-36
0.020
0
XLOC_013708
hsa-miR-155-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028355
Biotype: transcript isomorph
Gene id: XLOC_013708
Gene Name: XLOC_013708
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
60-86
0.181
0
RP11-340I6.8
hsa-miR-155-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000450544
Biotype: lincRNA
Gene id: ENSG00000226581
Gene Name: RP11-340I6.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
589-613
0.152
0
6mer
571-596
0.018
0
MIR155HG
hsa-miR-155-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_001458.3
Biotype: lincRNA
Gene id: NR_001458.3 (gene)
Gene Name: MIR155HG
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
327-346
0.154
9
LINC00506
hsa-miR-155-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_047469.1
Biotype: lincRNA
Gene id: NR_047469.1 (gene)
Gene Name: LINC00506
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4198-4219
0.153
3
MIR155HG
hsa-miR-155-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000456917
Biotype: lincRNA
Gene id: ENSG00000234883
Gene Name: MIR155HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
453-472
0.142
9
XLOC_001668
hsa-miR-155-5p
0.999
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003870
Biotype: transcript isomorph
Gene id: XLOC_001668
Gene Name: XLOC_001668
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3267-3292
0.097
1
6mer
5473-5495
0.010
1
6mer
855-879
0.009
1
6mer
1174-1193
0.008
1
6mer
4423-4442
0.005
1
XLOC_005269
hsa-miR-155-5p
0.999
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011296
Biotype: transcript isomorph
Gene id: XLOC_005269
Gene Name: XLOC_005269
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4624-4649
0.098
4
7mer
4840-4866
0.020
4
6mer
4869-4894
0.006
6
XLOC_012997
hsa-miR-155-5p
0.998
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026934
Biotype: transcript isomorph
Gene id: XLOC_012997
Gene Name: XLOC_012997
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1079-1094
0.097
1
6mer
530-556
0.010
1
6mer
1285-1304
0.006
0
RP11-354M20.3
hsa-miR-155-5p
0.998
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000614094
Biotype: antisense
Gene id: ENSG00000231104
Gene Name: RP11-354M20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
11-28
0.110
5
XLOC_001621
hsa-miR-155-5p
0.998
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003817
Biotype: transcript isomorph
Gene id: XLOC_001621
Gene Name: XLOC_001621
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1105-1120
0.098
1
6mer
1502-1525
0.011
1
RP11-768G7.3
hsa-miR-155-5p
0.997
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000482766
Biotype: lincRNA
Gene id: ENSG00000242816
Gene Name: RP11-768G7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
467-489
0.106
6
RP11-449D8.1
hsa-miR-155-5p
0.996
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000577994
Biotype: lincRNA
Gene id: ENSG00000265485
Gene Name: RP11-449D8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
58-77
0.102
8
AP006748.1
hsa-miR-155-5p
0.995
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000418874
Biotype: lincRNA
Gene id: ENSG00000223400
Gene Name: AP006748.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
16-39
0.097
1
KCNQ1OT1
hsa-miR-155-5p
0.995
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000597346
Biotype: antisense
Gene id: ENSG00000269821
Gene Name: KCNQ1OT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
85134-85161
0.012
1
8mer
24426-24446
0.011
1
9mer
33691-33708
0.011
Not Conserved
7mer
9086-9112
0.007
1
7mer
17691-17717
0.005
0
7mer
87789-87815
0.005
0
7mer
69239-69258
0.005
0
7mer
87453-87474
0.004
1
7mer
25974-25986
0.003
0
6mer
73985-73999
0.003
5
6mer
89329-89351
0.003
4
6mer
67016-67035
0.002
1
6mer
23150-23165
0.002
1
6mer
21960-21985
0.002
1
7mer
48457-48476
0.002
1
6mer
26531-26553
0.002
0
6mer
7339-7360
0.002
1
6mer
87579-87602
0.002
1
6mer
34457-34466
0.002
0
6mer
37094-37118
0.002
0
6mer
38932-38957
0.002
0
6mer
4330-4348
0.002
1
6mer
25525-25541
0.002
0
6mer
34050-34063
0.002
0
6mer
48599-48619
0.002
2
CASC2
hsa-miR-155-5p
0.994
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_026941.1
Biotype: lincRNA
Gene id: NR_026941.1 (gene)
Gene Name: CASC2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2071-2098
0.084
2
7mer
974-989
0.010
1
FAM224A
hsa-miR-155-5p
0.994
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000419557
Biotype: lincRNA
Gene id: ENSG00000233522
Gene Name: FAM224A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
693-720
0.075
0
6mer
634-652
0.010
0
6mer
1214-1231
0.009
0
XLOC_001391
hsa-miR-155-5p
0.994
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004715
Biotype: transcript isomorph
Gene id: XLOC_001391
Gene Name: XLOC_001391
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
240-266
0.093
4
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